How did we miss that? All of the top nav items are missing. Many of them can be accessed by going to the menu and navigating to 'System >> Base' or the 'Events and Notifications' in the Reports section. The two elements that are missing are the user_profile and the logout. I've submitted a bug report here on your behalf:
As a workaround, you can navigate to these elements by appending to the URL the appropriate destinations which are:
I know this is a pain and I will work with our theme dev team when they are back from vacation.